Publications

Selected Peer-reviewed Publications

#, corresponding author; 'Feng He' sometimes written as 'Feng Q. He';the online content from the NCBI or directly from the journal is available following the link underlying 'PubMed'.

Sylvie Delhalle, Sebastian Bode, Rudi Balling, Markus Ollert, Feng He#A Roadmap towards Personalized Immunology. Npj Systems Biology and Applications, 2018, 4:9. 
PubMed

Alexander Mazein, Marek Ostaszewski, Inna Kuperstein, Steven Watterson, Nicolas Le Novère, Diane Lefaudeux, Bertrand De Meulder, Johann Pellet, Irina Balaur, Mansoor Saqi, Maria Manuela Nogueira, Feng He, Andrew Parton, Nathanaël Lemonnier, Piotr Gawron, Stephan Gebel, Pierre Hainaut, Markus Ollert, Ugur Dogrusoz, Emmanuel Barillot, Andrei Zinovyev, Reinhard Schneider, Rudi Balling, and Charles Auffray. Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.  Npj Systems Biology and Applications, 2018, 4:21.
PubMed

Nastasja C. Hauck, Josiane Kirpach, Christina Kiefer, Sophie Farinelle, Sophie Maucourant, Stephen A. Morris, William Rosenberg, Feng He, Claude P. Muller, I-Na Lu. Applying Unique Molecular Identifiers in Next Generation Sequencing Reveals a Constrained Viral Quasispecies Evolution under Cross-Reactive Antibody Pressure Targeting Long Alpha Helix of Hemagglutinin. Viruses, 2018, 10(4). pii: E148. doi: 10.3390/v10040148.
PubMed

Davide G Franchina, Feng He, Dirk Brenner. Survival of the fittest: Cancer challenges T cell metabolism.  Cancer Letter2017,  pii: S0304-3835(17)30649-3. doi: 10.1016/j.canlet.2017.10.014
PubMed

Pavel Kolkhir, Elena Borzova, Clive Grattan, Riccardo  Asero, Dmitry Pogorelov, Marcus Maurer. Autoimmune comorbidity in chronic spontaneous urticaria: A systematic review. Autoimmunity Reviews2017, 16(12):1196-1208. 
PubMed

Feng He#, Markus Ollert. Network-guided key gene discovery for a given cellular process. Adv Biochem Eng Biotechnol2016 Oct 26, doi: 10.1007/10_2016_39
PubMed

Aidos Baumuratov, Paul Antony, Marek Ostaszewski, Feng He, Luis Salamanca, Laurent Antunes, Jos Weber, Laura Longhino, Pascal Derkinderen, Werner Koopman, Nico Diederich. Enteric neurons from Parkinson’s disease patients display ex vivo aberrations in mitochondrial structure.  Scientific Reports2016, 6, 33117.
PubMed

Feng He#, Wei Wang, Ping Zheng, Padhmanand Sudhakar, Jibin Sun et al.. Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions. Integrative Biology (Camb)2014, 6: 215-223.
PubMed

Padhmanand Sudhakar, Michael Reck, Wei Wang, Feng He, Irene Wagner-Döbler et al.. Construction and verification of the transcriptional regulatory response network of the biofilm forming caries pathogen Streptococcus mutans upon treatment with the biofilm inhibitor carolacton. BMC Genomics, 2014, 15:362. 
PubMed

Feng He, Ulrike Sauermann, Christiane Beer, Silke Winkelmann, Zheng Yu et al.. Identification of molecular sub-networks associated with cell survival in a chronically SIVmac-infected human CD4+ T cell line. Virology Journal, 2014, 11:152.
PubMed

Feng He and Rudi Balling, The role of regulatory T cells in neurodegenerative diseases. WIREs Systems Biology and Medicine, 2013, 5:153-180.
PubMed

Feng He, Hairong Chen, Michael Probst-Kepper, Robert Geffers, Serge Eifes, Antonio del Sol, Klaus Schughart, An-Ping Zeng & Rudi Balling. PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells. Molecular Systems Biology, 2012, 8:624-643. chosen as Featured Article in the journal
PubMed 

Feng He, Rudi Balling, An-Ping Zeng. Reverse engineering and verification of gene networks: Principles, assumptions and limitations of present methods and future perspectives. Journal of Biotechnology, 2009, 144:190-203. 
PubMed

Feng He, Jan Buer, An-Ping Zeng and Rudi Balling. Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation. Genome Biology, 2007, 8(9):181-198.
PubMed 

Bin Ma, Timo Zimmermann, Manfred Rohde, Simon Winkelbach, Feng He, Werner Lindenmaier, Kurt EJ Dittmar. Use of Autostitch for automatic stitching of microscope images. Micron 2007, 38 (5): 492-499
PubMed

Bin Ma, Feng He, Jadwiga Jablonska, Simon Winkelbach, Werner Lindenmaier, An‐Ping Zeng, Kurt EJ Dittmar. Six‐color segmentation of multicolor images in the infection studies of Listeria monocytogenes. Microscopy research and technique, 2007, 70 (2): 171-178
PubMed

Feng He and An-Ping Zeng. In search of functional association from time-series microarray data based on the change trend and level of gene expression. BMC Bioinformatics, 2006, 7:69-83. 
PubMed 

 

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